- Yokohama National University
- Institute of Advanced Sciences
- Chemistry of Hydrogen Energy Conversion
- Extremely Energy-Efficient Processors
- Information and Physical Security
- Medical Information and Communication Technology (Medical ICT)
- Next Generation Urban Habitats
- Policy Development in Latin America
- Risks and Uncertainties in the Economy
- Safety and Resilience of Infrastructure and Infrastructure Systems
- Safety and Risk Management of Process Industry & Energy Systems
- Safety of Marine Structures and Environmental Protection
- Self-Healing Materials
- YNU Research Centers
- Ray-Lite (Research Association in Yokohama for Light-Triggered Events)
- Research Center for Advanced JISSO Technology, Yokohama
- Research Center for Advanced Laser Spectoroscopey and Nanoscience
- Research Center for Advanced Superconducting Materials and Devices
- Research Center for Business Simulation
- Research Center for Disaster Mitigation
- Research Center for Economic and Social Statistics in Asia
- Research Center for fundamental technology and information transmission of cosmetic development in the next ten years
- Research Center for Human Function Re-acquirement by Engineering
- Research Center for Maritime Technologies to Protect Ocean Environment
- Research Center for Nanoscopic Physics and Biomedicine
- Research Center for New International Development Studies
- Research Center for Ocean Renewable Energy
- Research Center for Robotics and Mechatronics
- Research Center for Space-Environment Utilizing Science
- Research Center for the Carl S. Shoup Collection: Public Finance and Taxation Examined
- Research Center for Topological Graph Theory
- Institute of Advanced Sciences